ProteoIQ provides an easy-to-use and intuitive solution for combining results from popular database search engines to validate protein identifications, compare and quantify protein expression across 100's of samples in a single project. It supports all popular forms of peptide and protein quantification such as label-free, isotopic and isobaric tag based quantification workflows.
With label-free quantification workflows, you can quantify proteins via Area Under Curve (AUC) from extracted ion chromatograms (XIC) of every detected peak, from Precursor Intensity of identified peptides from the MS/MS spectra or from Spectral Counting (SC) of identified MS/MS spectra. Further, ProteoIQ allows you to quantify protein expression using iTRAQ, TMT, SILAC, ICAT or any other isobaric or isotopic labels.
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